BioHackrXiv Preprints

INTOXICOM Workshop Report: Systems Biology Models for Toxicology

2026-05-20T00:00:00+00:00

This report summarizes the ELIXIR Toxicology Community workshop on Systems Biology Models for Toxicology, held on 11–12 September 2025 in Athens, Greece. The workshop took place under the INTOXICOM Implementation Study workshop series (Integrating the toxicology community into ELIXIR 2024) and aimed to strengthen connections between systems biologyand toxicology by bridging ELIXIR resources with systems toxicology modelling approaches usedfor chemical risk assessment. The workshop explored the role of qualitative and quantitative exposure–health outcome models, including (quantitative) Adverse Outcome Pathways ((q)-AOPs), AOP networks, and mechanistic toxicology models. Participants examined two usecases focused on neurotoxicity and endocrine disruption, discussing how ELIXIR tools, platforms,core data resources, and modelling environments can support them. The workshop concluded with a discussion on a roadmap for integrating ELIXIR systems biology infrastructures and tools into applied systems toxicology. This report documents the presentations, discussions, and practical results that contribute to Deliverables of INTOXICOM WP5.

INTOXICOM Workshop Report: Advancing FAIR toxicology research output across Europe: ELIXIR & FAIRsharing studies

2026-05-01T00:00:00+00:00

As part of the INTOXICOM Implementation Study for the ELIXIR Toxicology Community a series of workshops is organized. The first INTOXICOM workshop was held in May 2024. Here, we here report on the 2nd workshop, titled “Enhancing Research Output: FAIR documentation and Tool Management for toxicology studies” which was held from 27 to 28 November 2024 at the Main Building of the University of Basel in Switzerland

INTOXICOM Workshop Report: FAIRification of Toxicological Research Output: Leveraging ELIXIR Resources

2024-11-05T00:00:00+00:00

This report documents the first workshop of the ELIXIR Toxicology Community (Martenset al., 2023), held in Utrecht on May 28-29, 2024 (FAIRification of Toxicological Research Output: Leveraging ELIXIR Resources, 2024), as part of the INTOXICOM Implementation Study workshop series (Integrating the Toxicology Community into ELIXIR, 2024). The main topic of the meeting was the FAIRification of toxicological research outputs and exploring the potential role of ELIXIR resources in this process. A team of ten people from the ELIXIR Toxicology Community, including Marvin Martens, Penny Nymark, Iseult Lynch, Meike Bünger, Rob Stierum, Thomas Exner, Egon Willighagen, Ammar Ammar, Dominik Martinát, and Karel Berka, coordinated the event.