As part of the INTOXICOM Implementation Study for the ELIXIR Toxicology Community a series of workshops is organized. The first INTOXICOM workshop was held in May 2024. Here, we here report on the 2nd workshop, titled “Enhancing Research Output: FAIR documentation and Tool Management for toxicology studies” which was held from 27 to 28 November 2024 at the Main Building of the University of Basel in Switzerland