COST Action GOBLIN Hackathon, Oviedo, Spain

  GOBLINHack26 

2026-06-08 - 2026-06-09
https://dmki-tuwien.github.io/goblin-hackathon/venue-accommodation.html

YAML instructions

biohackathon_name: "COST Action GOBLIN Hackathon"
biohackathon_url: "https://dmki-tuwien.github.io/goblin-hackathon/venue-accommodation.html"
biohackathon_location: "Oviedo, Spain"

Preprints

Jul 29, 2026
https://doi.org/10.37044/osf.io/3gak2_v1

• Schema-Driven Generation of Synthetic HL7 FHIR RDF Data from Shape Expressions (ShEx)

  We describe how synthetic HL7 FHIR data in RDF was produced directly from Shape Expressions (ShEx), using the authoritative FHIR R4 ShEx schema as the sole source of domain structure. Rather than encoding clinical knowledge in a domain-specific simulator, we drive generation from the published shapes: a schema-driven generator (rudof generate) consumes them, and a small configuration file controls scale, cardinalities, and value generation. This note reports the method - schema selection, a minimal schema preparation step, the generator configuration, and the invocation - so that the process is reproducible. less than 1 minute read
Jun 16, 2026
https://doi.org/10.37044/osf.io/auhzg_v1

• Rendering SSSOM ontology mappings as RDF named graphs and RDF 1.2 triple terms

  SSSOM shares ontology mappings as a TSV+YAML file usually consumed as a dataframe. At the GOBLIN hackathon we explored rendering it as RDF with the individual mapping as first-class object, via two complementary serializations: named graphs (TriG, modelling sssom:MappingSet) and RDF 1.2 triple terms (Turtle 1.2, modelling sssom:Mapping). We compare the design trade-offs and show they compose rather than compete. As proof of concept we rendered all EBI OLS extracts (271 sets, ~6.2M mappings) into both forms and built an in-browser Oxigraph + Comunica demo. Wikidata extraction is ongoing. An early proposal to start discussion. less than 1 minute read