Scop3PTM Next was developed during BioHackathon Europe 2025 to address the need for integrated visualization of protein-centric data across sequence (and modification), interaction and structural contexts. The project delivers an open-source library of modular JavaScript components, built with Vue.js and documented with Storybook, enabling reusable and interoperable visualizations. The framework provides 1D sequence tracks, contact-map networks and interactive 3D structural renders, using MolSpecView for rendering 3D structures linked to Nightingale 1D tracks. Together, these components offer a unified interface for exploring PTM features across multiple representational layers. This work establishes the basis for a community-oriented visualization library to support proteomics analysis.

Figures

Presentation of Project #22’s goals and required skills during the kick-off meeting on Monday.
Presentation of Project #22’s goals and required skills during the kick-off meeting on Monday.
The complete group picture including on-site and online members.
The complete group picture including on-site and online members.
The kick-off slide at the “flash presentation” meeting on Monday.
The kick-off slide at the “flash presentation” meeting on Monday.
The visual library of components generated using the Storybook framework.
The visual library of components generated using the Storybook framework.
Example of the lollipop component for positional values created by Natalia Tichshenko.
Example of the lollipop component for positional values created by Natalia Tichshenko.
The network component for contact maps created by Mahfouz Shehu and Yusuf Shehu.
The network component for contact maps created by Mahfouz Shehu and Yusuf Shehu.
Example of the tracks migrated by Elyse Cheng.
Example of the tracks migrated by Elyse Cheng.
The Topology viewer connected to the two-panel component.
The Topology viewer connected to the two-panel component.
The hand-written poster elaborated for the “Mid-week reporting poster session & coffee break” on Wednesday afternoon.
The hand-written poster elaborated for the “Mid-week reporting poster session & coffee break” on Wednesday afternoon.
The recap slide presented during the “Final Project Presentations” meeting on Friday morning.
The recap slide presented during the “Final Project Presentations” meeting on Friday morning.

These figures come from the source repository of the preprint; their captions are also in the PDF.