Archive
2025
June
- Software Quality Indicators: extraction, categorisation andrecommendations from canonical sources
- Addressing Background Genomic and Environmental Effects on Health through Accelerated Computing and Machine Learning: Results from the 2025 Hackathon at Carnegie Mellon University
- Leveraging RDF and CURIE metadata resolution with identifiers.org
May
- BioHackEU24 report: Expanding FAIR database integration through elucidation and transformation of underlying graph schemas
- BioHackSWAT4HCLS25 report: Towards AI-Ready Datasets for the Life Sciences
- Reusable RDM Planning Environments for Trainings and Workshops: A BioHackathon Europe 2024 Report
- Enhancing bio.tools by Semantic Literature Mining
April
- BioHackEU24 report: Integrating Bioconductor packages with the ELIXIR Research Software Ecosystem using EDAM
- An assessment of Croissant ML metadata descriptors for AI-ready datasets
March
- 2024 OME-NGFF workflows hackathon
- Development of FAIR image analysis workflows and training in Galaxy
- Secure Processing Environments as a Service in the de.NBI Cloud
- Report: Workshop on connecting Knowledge Graphs with BioChatter
- Simplifying and Standardizing the Creation of Data Use Agreements for Life Sciences and Beyond - BH Germany2024
- BioHackEU24 report: ORCID and ROR identifiers in BioHackrXiv reports
February
- BioHackGermany24 report: User-friendly ISA-based metadata annotation of life science experiments with ISA Wizard
- BioHackJP24 report: Running a WikiBlitz
- BioHackEU24 report: Bioschemas for Mortals
- BioHackEU24 report: Creating user benefit from ARC-ISA RO-Crate machine-actionability & Increasing FAIRness of digital agrosystem resources by extending Bioschemas
January
2024
December
- 1st SpatialData Developer Workshop
- On the value of data
- Exploring Bioinformatics in the Wild: Insights from Real LLM Conversations
- BioHack24 report: Toward improving mechanisms for extracting RDF shapes from large inputs
- BioHack24 report: Using discovered RDF schemes: a compilation of potential use cases for shapes reusage
- Publishing FAIR datasets from Bioimaging repositories
November
October
September
August
- Revisiting SRAmetadb.sqlite
- DBCLS BioHackathon 2024 Report for Project: Human Glycome Atlas
- The Plant Breeding Ontology (PBO): towards an ontology for the plant breeding community
- DBCLS BioHackathon 2024 report: Everything about workflow and container
- Ontologies for single-cell experiments
July
June
- VIB Hackathon on spatial omics tools and methods
- Phenological Diversity Trends with Remote Sensing Datacubes
April
- How to improve the annotation of Galaxy resources? Outcomes of an online hackathon for improving the annotation of Galaxy resources for microbial data resources
- SPARQL services for InterMine databases
- Synergising ELIXIR resources for training in systems biology
- Enhancing the image analysis community in Galaxy
- Secure data-out API - enabling encrypted htsget transactions
- How to increase the findability, visibility, and impact of Galaxy tools for your scientific community
March
- BioHackEU23: FAIR Workflow Execution with WfExS and Workflow Run Crate
- Building Towards a Machine-Actionable Software Management Plan: A BioHackathon Europe 2023 Report
February
- Metadata handling for BioHackathon publications through BioHackrXiv
- Genome Annotation and Other Post-Assembly Workflows for the Tree of Life
- Improving Bioschemas creation and community adoption through process improvements, tool development, and advancing compliance to FAIR standards
January
- Bioschemas Resource Index for Chem and Plants
- BioHackJP 2023 Report R1:Improving phenotype ontology interoperability
- BioHackJP 2023 Report R1: Mapping human genome variations to their mouse counterparts for identifying disease model mouse strains
- BioHackEU23 report: Enabling FAIR Digital Objects with RO-Crate, Signposting and Bioschemas
- Benchmarks for Bioinformatics Workflow Bake Offs
- BioHackEU23 report: Enabling continuous RDM using Annotated Research Contexts with RO-Crate profiles for ISA
2023
December
November
- The fourth annual Carnegie Mellon Libraries hackathon for biomedical data management, knowledge graphs, and deep learning
- Rendering co-author graphs using linked-open-data from Wikidata
- Exploring the landscape of the genomic wastewater surveillance ecosystem: a roadmap towards standardization
October
September
July
- BioHackEU22 Report: Enhancing Research Data Management in Galaxy and Data Stewardship Wizard by utilising RO-Crates
- Infrastructure for synthetic health data
- Redesign of the validation framework in LinkML
- Machine learning of transcriptome data treated with DNA base editor
- BioHackJP 2023 Report R3: Expand the pathway analysis environment to non-model organisms
- BioHackJP 2023 Report R4: integration of glyco data with chemo-, geno-, lipid-omics and pathway data
- RDF Data integration using Shape Expressions
- Evaluating Oxigraph Server as a triple store for small and medium-sized datasets
June
- Bioinforming
- BioHackEU22 Report for Project 31: The What & How in data management: Improving connectivity between RDMkit and FAIR Cookbook
April
- Operator dashboard for controlling the NeIC Sensitive Data Archive
- Improving Metadata Collection and Aggregation in Plant Phenotyping Experiments with MIAPPE Wizard and DataPLANT
- Onboarding suite for Federated EGA nodes
- Enabling profile updates through the Data Discovery Engine (DDE)
March
February
- Streamlining data brokering from Research Data Management platforms to ELIXIR Repositories
- Executing workflows in the cloud with WESkit
- An evaluation of EDAM coverage in the Tools Ecosystem and prototype integration of Galaxy and WorkflowHub systems
- Empowering the community with notebooks for bespoke microbiome analyses
- CiTO support for BioHackrXiv
- Addressing sex bias in biological databases worldwide
January
- BioHackEU22 Report for Project 16: Make your own or favourite software available on your cluster with EasyBuild/EESSI
- Validating Subtype Specific Oncology Drug Predictions
2022
December
November
- Metadata for BioHackrXiv Markdown publications
- Mapping OHDSI OMOP Common Data Model and GA4GH Phenopackets for COVID-19 disease epidemics and analytics
- An ETL pipeline to construct the Intrinsically Disordered Proteins Knowledge Graph (IDP-KG) using Bioschemas JSON-LD data dumps
- Enhancement and Reusage of Biomedical Knowledge Graph Subsets
- CWLD: Mapping colloquial wet lab language to ontologies
September
May
- NBS Hack Week: Pilot study on ARRIVE guidelines E10 compliance
- An iNaturalist-Pl@ntNet-workflow to identify plant-pollinator interactions – a case study of Isodontia mexicana
March
2021
December
- DS Wizard Meets DAISY: A Romance Solving Data Protection Requirements in Data Management Planning
- Network analysis of specimen co-collection
October
September
August
- The COVID-19 epidemiology and monitoring ontology
- Measuring outcomes and impact from the BioHackathon Europe
June
- SnpReportR: A Tool for Clinical Reporting of RNAseq Expression and Variants
- Exploiting Bioschemas Markup to Populate IDPcentral
April
March
- SB4ER: an ELIXIR Service Bundle for Epidemic Response
- Connecting molecular sequences to their voucher specimens
2020
December
- Linking PubDictionaries with UniBioDicts to support Community Curation
- Progress on Data Stewardship Wizard during BioHackathon Europe 2020
July
June
May
- Determining a novel feature-space for SARS-CoV-2 sequence data
- Global analysis of human SARS-CoV-2 infection and host-virus interaction
- Comparison of SARS-CoV-2 variants with INSaFLU and galaxyproject